MCP serverCommunity

BioMapper

Resolve metabolite, lipid, protein, gene and lab names to knowledge-graph IDs.

Phenome-Health · ↓ 0 installs

Install

Add the config to your client settings. Replace values in <angle brackets> with your own.

claude_desktop_config.json

{
  "mcpServers": {
    "biomapper": {
      "command": "uvx",
      "args": [
        "biomapper==1.6.2"
      ],
      "env": {
        "BIOMAPPER_MCP_ROOTS": "<BIOMAPPER_MCP_ROOTS>",
        "BIOMAPPER_API_KEY": "<BIOMAPPER_API_KEY>",
        "BIOMAPPER_BASE_URL": "<BIOMAPPER_BASE_URL>",
        "BIOMAPPER_MCP_HOME": "<BIOMAPPER_MCP_HOME>"
      }
    }
  }
}

Or in one command — the CLI adds the server to your client config:

CLI

npx ai-point add io.github.trentleslie/biomapper

Tools

The tool list will appear once the server has a sandbox or the editors fill it in.

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